Baker Institute for Animal Health

DEDICATED TO THE STUDY OF VETERINARY INFECTIOUS DISEASES, IMMUNOLOGY, CANCER, REPRODUCTION, GENOMICS AND EPIGENOMICS

Baker Institute Publications Fiscal Year 2021

June 2021

Schang Luis, Hu, Mi Yao, Flores Cortes Esteban, Sun Kairui. (2021). Chromatin-mediated epigenetic regulation of HSV-1 transcription as a potential target in antiviral therapy. Antiviral Res. 2021 May 31;105103.

Goetschius Daniel J, Hartmann Samantha R., Organtini Lindsey J, Callaway Heather, Huang Kai, Bator Carol M, Ashley Robert E, Makhov Alexander M, Conway James F, Parrish Colin R, Hafenstein Susan L. (2021). High-resolution asymmetric structure of a Fab–virus complex reveals overlap with the receptor binding site. PNAS. June 8, 2021 118 (23).

May 2021

Tomlinson Joy E, Wolfisberg Raphael, Fahnøe Ulrik, Patel Roosheel S, Trivedi Sheetal, Kumar Arvind, Sharma Himanshu, Nielsen Louise, McDonough Sean P, Bukh Jens, Tennant Bud C, Kapoor Amit, Rosenberg Brad R, Rice Charles M, Divers Thomas J, Van de Walle Gerlinde R, Scheel Troels K H (2021). Pathogenesis, miR-122 gene-regulation, and protective immune responses after acute equine hepacivirus infection. Hepatology. 2021 Mar 13.

Cummings Kevin J, Siler JD, Abou-Madi N, Goodman Laura B, Mitchell Patrick K, Tallmadge Rebecca M, Palena L, Childs-Sanford Sara Egst. (2021). Salmonella isolated from central New York wildlife admitted to a veterinary medical teaching hospital. In Press, Journal of Wildlife Diseases

March 2021

Wodarz Dominik, Komarova Natalia L, Schang Luis M. Role of high-dose exposure in transmission hot zones as a driver of SARS-CoV-2 dynamics. J R Soc Interface. 2021 Mar;18(176):20200916.

Tyson Gregory H, Ceric Olgica, Guag Jake, Nemser Sarah, Borenstein Stacey, Slavic Durda, Lippert Sarah, McDowell Rebecca, Krishnamurthy Aparna, Korosec Shannon, Friday Cheryl, Pople Neil, Saab Matthew E, Fairbrother Julie-Helene, Janelle Isabelle, McMillan Deanna, Bommineni Yugendar R, Simon David, Mohan Shipra, Sanchez Susan, Phillips Ashley, Bartlett Paula, Naikare Hemant, Watson Cynthia, Sahin Oorhan, Stinman Chloe, Wang Leyi, Maddox Carol, DeShambo Vanessa, Hendrix Kendrix, Lubelski Debra, Burklund Amy, Lubbers Brian, Reed Debbie, Jenkins Ttracie, Erol Erdal, Patel Mukeshbhai, Locke Stephan, Fortner Jordan, Peak Laura, Balasuriya Udeni, Mani Rinosh, Kettler Niesa, Olsen Karen, Zhang Shuping, Shen Zhenyu, Landinez Martha Pulido, Thornton Jay Kay, Thachil Anil, Byrd Melissa, Jacob Megan, Krogh Darlene, Webb Brett, Schaan Lynn, Patil Amar, Dasgupta Sarmila, Mann Shannon, Goodman Laura B, Franklin-Guild Rebecca June, Anderson Renee R, Mitchell Patrick K, Cronk Brittany D, Aprea Missy, Cui Jing, Jurkovic Dominika, Prarat Melanie, Zhang Yan, Shiplett Katherine, Campos Dubra D, Van Balen Rubio Joany, Ramanchandran Akhilesh, Talent Scott, Tewari Deepanker, Thirumalapura Nagaraja, Kelly Donna, Barnhart Denise, Hall Lacey, Rankin Sara D, Dietrich Jaclyn, Cole Sstephen, Scaria Joy, Antony Linto, Lawhon Sara D, Wu Jing, McCoy Christine, Dietz Kelly, Wolking Rebecca, Alexander Trevor, Burbick Claire, Reimschuessel Renate. (2021). Genomics accurately predicts antimicrobial resistance in Staphylococcus pseudintermedius collected as part of Vet-LIRN resistance monitoring. Vet Microbiol. 2021 Mar;254:109006.

February 2021

Saikia Mridusmita, Holter Marlena, Donahue Leanna R, Lee Isaac S, Zheng Qiaonan C, Wise Journey L, Todero Jenna E, Phuong Daryl J, Garibay Darline, Coch Reilly, Sloop Kyle W, Garcia-Ocana Adolfo, Danko Charles G, Cummings Bethany P. (2021) GLP-1 receptor signaling increases PCSK1 and β cell features in human α cells.

Goodman Laura, Whittaker Gary (2021) Public health surveillance of infectious diseases: beyond point mutations. The Lancet Mircobe. Vol 2, Issue 2, E53-E54, 01 February 1, 2021.

Tufts Danielle M, Goodman Laura B, Benedict Meghan C, Davis April D, VanAcker Meredith C, Diuk-Wasser Maria. (2021). Association of the invasive Haemaphysalis longicornis tick with vertebrate hosts, other native tick vectors, and tick-borne pathogens in New York City, USA. Int J Parasitol. 2021 Feb;51(2-3):149-157.

January 2021

Patel Roosheel S, Tomlinson Joy E, Divers Thomas J, Van de Walle Gerlinde R, Rosenberg. (2021). Single-cell resolution landscape of equine peripheral blood mononuclear cells reveals diverse cell types including T-bet + B cells. BMC Biol. 2021 Jan 22;19(1):13.

Stout Alison E, Hofmar-Glennon Hayley G, André Nicole M, Goodman Laura B, Anderson Renee R, Mitchell Patrick K, Thompson Belinda S, Lejeune Manigandan, Whittaker Gary R, Goodrich Erin L (2021). Infectious disease surveillance of apparently healthy horses at a multi-day show using a novel nanoscale real-time PCR panel. J Vet Diagn Invest. 2021 Jan;33(1):80-86.

Mitchell Patrick K, Cronk Brittany D, Voorhees Ian EH, Rothenheber Derek, Anderson ReneeR, Chan Timothy H, Wasik Brian R, Dubovi EJ, Parrish Colin R, Goodman Laura B. Method comparison of targeted influenza A virus typing and whole-genome sequencing from respiratory specimens of companion animals. J Vet Diagn Invest. 2020 Nov 24;1040638720933875.

Gioia G, Addis MF, Goodman LB, Mitchell PK, Thompson B, Goodrich E, Moroni P. (2021). Draft Genome Sequence of Acholeplasma laidlawii Isolated from the Conjunctiva of a Heifer with Infectious Bovine Keratoconjunctivitis. Microbiol Resour Announc. 2021 Jan 28;10(4).

December 2020

Harman Rebecca M, Patel Roosheel S, Fan Jennifer C, Park Jee E, Rosenberg Brad R, Van de Walle Gerlinde R (2020) Single-cell RNA sequencing of equine mesenchymal stromal cells from primary donor-matched tissue sources reveals functional heterogeneity in immune modulation and cell motility. Stem Cell Res Ther. 2020 Dec 4; 11(1):524.
*This project was recognized by the Cornell Center for Vertebrate Genomics as a noteworthy publication.

Goetschius Daniel J, Hartmann Samantha R, Organtini Lindsey J, Callwaway Heather, Huang Kai, Bator Carol M, Ashley Robert E, Makhov Alexander M, Conway James F, Parrish Colin R, Hafenstein Susan. Mechanisms of antibody binding revealed by asymmetric Fab-virus complexes. bioRxiv : the preprint server for biology. 2020 December.  Has not been formally peer-reviewed.

November 2020

Ledet Melissa M, Harman Rebecca M, Fan Jennifer C, Schmitt-Matzen Emily, Diaz-Rubio Maria E, Zhang Sheng, Van de Walle Gerlinde (2020) Secreted sphingomyelins modulate low mammary cancer incidence observed in certain mammals. Sci Rep. 2020 Nov 25;10(1):20580

Vengust Modest, Jager Mason C, Zalig Valentina, Cociancich Vasilij, Laverack Melissa, Renshaw Randall W, Dubovi Edward, Tomlinson Joy E, Van de Walle Gerlinde R, Divers Thomas J. (2020). First report of equine parvovirus-hepatitis-associated Theiler's disease in Europe. Equine Vet J. 2020 Nov;52(6):841-847.

October 2020

Harman Rebecca M, Das Sanjna P, Bartlett Arianna P, Rauner Gat, Donahue Leanne R, Van de Walle Gerlinde R. (2020) Beyond tradition and convention: benefits of non-traditional model organisms in cancer research. Cancer Metastasis Rev.  2020 Oct 28.

September 2020

Komarova N Natalia, Schang Luis M, Wodarz Dominik L (2020) Patterns of the COVID19 pandemic spread around the world: exponential vs. power laws. Journal of the Royal Society Interface.  30 Sep 2020 – 01:10

Meliopoulos Victoria, Cherry Sean, Wohlgemuth Nicholas, Honce Rebekah, Barnard Karen, Gauger Phillip, Davis Todd, Shult Peter, Parrish Colin, Schultz-Cherry Stacey (2020)Primary swine respiratory epithelial cell lines for the efficient isolation and propagation of influenza A viruses. J Virol. 2020 Sep 23:JVI.01091-20

August 2020

Roebke Katherine E, Yingying Guo, Parker John SL, Danthi Pranav. Reovirus σ3 protein limits interferon expression and cell death inductionBioRxiv. 2020 August.

Tallmadge Rebecca L, Antczak Douglas F, Felippe Maria Julia Bevilaqua. Genetics of Immune Disease in the Horse Nucleic Acids Research. 2019 June 20;47(11). Vet Clin of North America, Equine Practice. Volume 36, Issue 2, August 2020, 273-288.

July 2020

Mukai Chinatsu, Nelson Jacquelyn L, Cheong Soon Hon, Diel de Amorim Mariana, Travis Alexander J. (2020). Impacts of oocyte/zygote timing for in vitro fertilization and gene editing in the dog. Theriogenology. 2020 Jul 1;150:347-352.

Blumberg Amit, Zhao Yixin, Huang Yi-Fei, Dukler Noah, Rice Edward J, Chivu Alexandra G, Krumholz Katie, Danko Charles G, Siepel Adam. (2020) Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data. BioRxiv. 13 June 2020. Has not been formally peer-reviewed.

Tomlinson Joy E, Wolfisberg Raphael, Fahnøe Ulrik, Sharma Himanshu, Renshaw Randall W, Nielsen Louise, Nishiuchi Eiko, Holm Christina, Dubovi Edward, Rosenberg Brad R, Tennant Bud C, Bukh Jens, Kapoor Amit, Divers Thomas J, Rice Charles M, Van de Walle Gerlinde R, Scheel Troels K H. (2020) Equine pegiviruses cause persistent infection of bone marrow and are not associated with hepatitis. PLoS Pathog. 2020 Jul 10;16(7):e1008677.

Fortier Lisa Ann, Goodrich Laurie Ruth, Ribitsch Iris, Schnabel Lauren Virginia,  Shepard David Owen,  Van de Walle Gerlinde R Watts Ashlee Elizabeth, Smith Roger Kenneth Whealands. One health in regenerative medicine: report on the second Havemeyer symposium on regenerative medicine in horses. Regen Med. 2020 Jun;15(6):1775-1787.